NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187776_10848078

Scaffold Ga0187776_10848078


Overview

Basic Information
Taxon OID3300017966 Open in IMG/M
Scaffold IDGa0187776_10848078 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)659
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033311Metagenome177Y
F047848Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0187776_108480781F033311GAGMKELAQAYLAQGKTVRAAALMLNLIKTEPTPENLELLAEIYMRQGLVDDAKELYLRLVKAGLMHEVLG
Ga0187776_108480782F047848AGGAGGMDYVHVFVLRTLCVDEDGEIKTRNVAVTFDMFEAEDHRNKGAENGYDTFVVPGDWREEQ
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