NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187776_10041853

Scaffold Ga0187776_10041853


Overview

Basic Information
Taxon OID3300017966 Open in IMG/M
Scaffold IDGa0187776_10041853 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2583
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038913Metagenome / Metatranscriptome165Y
F050025Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0187776_100418532F038913GGCGGVSGLWEIEASVSPGREILADGSEQLLVRVQITDPGNADPTANAFIDLRSTCARRLALEILAAADDADWQTERDGCPEPAR
Ga0187776_100418533F050025GGAGMSVSDRADPAAPPAPTLPARARALAARLAALFEADQEIVARLNGAHHLLAGANDRLLSAPAADPLVIHRQVHRAFCTYQQASEQRRQLAVDVGELSQQLTDTLTAAGYQPEHARSASVHELAAGAWRPPEKGKESRR

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