Scaffold Ga0187776_10002612

Overview

Basic Information

• Taxon OID: 3300017966
• Scaffold ID: Ga0187776_10002612
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9205
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.2396
  • Long. (^o): -73.2024
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045975	Metagenome	152	Y
F094719	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187776_100026125	F094719	AGG	MLFAPKTPALRRWRLWFGALLVAEIGWFALMRPPFAGHFKSVLLLALIPVAVVGYVYLLAAVAAFLDSRDWDYQMRQVIVIMLGLSVGFFVSVLSSISAAQLEASAAECHQAECPPADEPDQ
Ga0187776_100026126	F045975	GAG	VTVQGRGIALPIADSVAIGFLRLVQLRARHPVEAEERAVELVRSDWAASAHAGRNLGDAPRLTISRIGLLHWWHRLLGAPRGYIFFTEDGVQVPSSSP