Scaffold Ga0190266_10023805

Overview

Basic Information

• Taxon OID: 3300017965
• Scaffold ID: Ga0190266_10023805
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1841
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 37.9013
  • Long. (^o): -109.5337

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045167	Metagenome	153	Y
F080948	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190266_100238052	F080948	AGGAG	MQVTSYQCRTRQPRRGPVAAGLLLCFASIVGVAQATEFITGFDEKLKAPMAMGATELKSRAQSYSASFARLRELSPTEMVTNKALFLEHFDLVWQINRALEDKRPLEDLSTLGLEKHDGGFRIDYSAFPQWQPFPEVLASLVPTWSMDGVGPLLVNRGFRGSDVAALKNYVDTHDLKAATSARTLPIAISFSKVVKKYDKIKRPVGKDLVFSFLYQRGKVEAEARRAWSEGLIRTLDDQRVRVLHSYFGEMPGIGYWAASDVDAGIANLLAVMRLPDYEQRATAEARGVSP
Ga0190266_100238053	F045167	GAGG	MKAIHFTARCRAMLFSLAALLGETQLASAVQMSVQPSTPSQWGTGSAFYLGHTVLASTDFNTLNAGGTYTVQCNHPATLPMTGERALPSSTNGFGKNRLTVTIPAQLPALRNISGWLQIPGNTQLSCNYRWTSFATEGGYSIGAGGISFQT