Scaffold Ga0190266_10002316

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190266_10002316

Scaffold Ga0190266_10002316

Overview

Basic Information
Taxon OID	3300017965 Open in IMG/M
Scaffold ID	Ga0190266_10002316 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3826
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (63.64%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	37.9013	Long. (^o)	-109.5337	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030919	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190266_100023163	F030919	N/A	MAAPYPPAGNQTPHTERPLKVYGEPYAQGQPLPVGAVIDPGTPPLFTDGQARVPLPSGWVVLHLGDYVISNRYTGAPVEVISAEEFAERFGPSE

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