Scaffold Ga0190266_10000952

Overview

Basic Information

• Taxon OID: 3300017965
• Scaffold ID: Ga0190266_10000952
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5114
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 37.9013
  • Long. (^o): -109.5337

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081905	Metagenome	114	Y
F094821	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190266_100009525	F094821	AGG	VFNSLTITGGAGSVLWGYRVAVELQSWRIVRAKAEGGVWILSATITRIDKFQARQAPLLFSAPRAGGFWAWPIETIAIGETSLRATLGPPER
Ga0190266_100009526	F081905	AGGAG	MAIISGRNGQVLWDPAGTTAVEILSLNAWTADFKTEYEDVTCFGDVNRVYIPGMKDAGGTLSGFFNSAELALFEAAEQDTPGLLKLVPSSTEASFFWTGPAYMDASIDASLSAPKVSGTWKAAGPFLLNGGTLTALAARVKDAEARRRERAEPKAAA