Scaffold Ga0180437_10070235

Overview

Basic Information

• Taxon OID: 3300017963
• Scaffold ID: Ga0180437_10070235
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3112
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_66_20 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021885	Metagenome / Metatranscriptome	217	Y
F049303	Metagenome / Metatranscriptome	147	Y
F091957	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_100702351	F049303	AGG	MSTFLNDPVRVLAVIAAAAVLLAPYLPAVLKRLRAAWASLPTVPKPPADGIGVSDLTMVLDLANRLRLDGHEKATELAKQLLDAMLEVPQK
Ga0180437_100702352	F021885	AGGAG	MNIFEKLKLLAEWSPLLTFAQQLAAEDDIHAKAVIVTEAMEWVASRTEIEWDDELASHISDILISEEGEAFVRWILERMQVSDVDVSK
Ga0180437_100702353	F091957	AGGCGG	MRGDTTAINVATLRLQWASHSSMASICSFWTVSRDQLIRLRDVHKLPKRHNRSLRRKPEREPEPGRAEKSASEGSLDLAPRVAERAAAVRATWSENIRQHRHYSSASVFEVPIVQVEIEPEEDMDF