NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0180437_10068128

Scaffold Ga0180437_10068128


Overview

Basic Information
Taxon OID3300017963 Open in IMG/M
Scaffold IDGa0180437_10068128 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3176
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033765Metagenome176N
F052939Metagenome142Y
F058110Metagenome / Metatranscriptome135N
F060425Metagenome133Y
F106097Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0180437_100681281F052939GGAGMNIEQKILEQIWDTLMKNDKYPDHFNFATDLRYDHWLDTKPDNPTISLVVEKAGRPTTYKISINEVKNEIIT
Ga0180437_100681282F033765GAGGMKSLLKTILDECEKNKLMYRANAYDLWNNGCEDMIVPWGYDFEALTETMKAFELDERLGNIQIIPESKVKTHAELIDSIRSSFLEYSSEDEERVLIQNLTDEQIISESPDEYYSGHMWIMWTNYGGNEHLDCFTDYTTSLDKYFDVSELTNKWEDQYNEFKLGLI
Ga0180437_100681283F060425GGAMDMQKSRILHAELKNGSNYKYLWLGNDHFADLFNSWDFESNEGKYEGMLDFDYTVSFTIEMDEIKDEQSIIGMSFDEGLEDSEIVDFTLEDINWENN
Ga0180437_100681285F106097AGGAGMNRQQMLDILLEENVNGDWTDNYYFEKDNIHIVWCEALELWLMLDYKTFPKTFESSSTLEEAFEYVFEDQLSTEGIKQFLEERDLICAK
Ga0180437_100681288F058110AGGAGMKNEYNNVAISRITFFKFDDEGNELENEDGTIKEFELKPVRFKPIEYLCEDLDPEYLVEIKGEEK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.