NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180437_10012677

Scaffold Ga0180437_10012677


Overview

Basic Information
Taxon OID3300017963 Open in IMG/M
Scaffold IDGa0180437_10012677 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9934
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (25.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.3Long. (o)-115.8Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002287Metagenome / Metatranscriptome574Y
F004838Metagenome / Metatranscriptome421Y
F027829Metagenome193N
F035741Metagenome / Metatranscriptome171N
F041161Metagenome / Metatranscriptome160N
F067260Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0180437_1001267713F004838N/AMALSAQDKILYVANKLGLSTLGQMQGSTGAVYDVDTDVSGQIFSSASRHQNPGVTNITENQFEVNEALLIENISFYVKNAAGDTLNFQNVYGSNAVILYDLVIGNKRVMKDTPVFAAGSPYTFANTGNIQKVNIDESLNPAFNPRHQTFLEGAGILIPPQVQWYVDYRIFNVVTGATIAASDETAIGCYLFGTRVLLNFNTTI
Ga0180437_1001267714F002287N/AMSQVGKLGFVDSKLGAPTSGQQTTRILFNTIEAPGTTSSLSFFKNFQGLTNGQTNLTQNKLDSMESMVIKTIWLTQFQSSGELEAIGGLVQQTLSVIVGNQTVVKNLPIQFNQGINGQAFDRLHENGGSSTNEVAFANPIIQTAMPCEIRLLTDIVIPPQVAFEVRIESNAGVYGSGAVVCALAGYGKIFSAGSSF
Ga0180437_1001267715F000710N/AMATNMDISYRQGIRSKGFAITAATGITQQTLSLSGLAKSFEGFLLTSAFTATPQTVINPKQLRITLTINNDVVIDDDVAVHYSSPATGGFSGGFPFFIPIPRRLTGQDTIQVRLVNAAASQNVDVVVWYRNEL
Ga0180437_1001267718F067260GGAMNHFEKIVDPDLKRCETPEQMLQVLMYHYELDCKLGTITSLAFRQGLKAAVNMINPKAKTSSSALSH
Ga0180437_1001267721F035741N/AMTAADVIGKYLIAEKDVPIVSFPGSAPIGVVQKGLVVGPVYSWIEKNGKLYWAFDYTIPGQAPGAYYAEHRPEFWKLSTTGAGGSTNVTITPGGLPSWAVPAGLAALALILLK
Ga0180437_100126777F027829N/AMAFTNRFEADISPKKTRIDAKAYQQYIDIPIGENPETGKVYTFRAYIAVSKMQKKLNYKPTILVTLTFFKYKLHLQTRDIDALNSAFRKLSSFIDLQEANLKDKLSQEISAYDKWEQEYIDRKKEGIISINR
Ga0180437_100126778F041161N/AMYTLQMMGKQVAESVQFADQFLPRATTPKEIWFILKDNLVYKNDPPGIELLQSFPSLMNDNYWGIPGAGDCDCFTIAALACAAARSIPARAVIVGNSSQAPTHVYCQYLVDGRWIDFDLVSSDYGITKPYKYKQTLKLH

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