Basic Information | |
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Taxon OID | 3300017963 Open in IMG/M |
Scaffold ID | Ga0180437_10012677 Open in IMG/M |
Source Dataset Name | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9934 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (25.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.3 | Long. (o) | -115.8 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000710 | Metagenome / Metatranscriptome | 925 | Y |
F002287 | Metagenome / Metatranscriptome | 574 | Y |
F004838 | Metagenome / Metatranscriptome | 421 | Y |
F027829 | Metagenome | 193 | N |
F035741 | Metagenome / Metatranscriptome | 171 | N |
F041161 | Metagenome / Metatranscriptome | 160 | N |
F067260 | Metagenome | 126 | N |
Protein ID | Family | RBS | Sequence |
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Ga0180437_1001267713 | F004838 | N/A | MALSAQDKILYVANKLGLSTLGQMQGSTGAVYDVDTDVSGQIFSSASRHQNPGVTNITENQFEVNEALLIENISFYVKNAAGDTLNFQNVYGSNAVILYDLVIGNKRVMKDTPVFAAGSPYTFANTGNIQKVNIDESLNPAFNPRHQTFLEGAGILIPPQVQWYVDYRIFNVVTGATIAASDETAIGCYLFGTRVLLNFNTTI |
Ga0180437_1001267714 | F002287 | N/A | MSQVGKLGFVDSKLGAPTSGQQTTRILFNTIEAPGTTSSLSFFKNFQGLTNGQTNLTQNKLDSMESMVIKTIWLTQFQSSGELEAIGGLVQQTLSVIVGNQTVVKNLPIQFNQGINGQAFDRLHENGGSSTNEVAFANPIIQTAMPCEIRLLTDIVIPPQVAFEVRIESNAGVYGSGAVVCALAGYGKIFSAGSSF |
Ga0180437_1001267715 | F000710 | N/A | MATNMDISYRQGIRSKGFAITAATGITQQTLSLSGLAKSFEGFLLTSAFTATPQTVINPKQLRITLTINNDVVIDDDVAVHYSSPATGGFSGGFPFFIPIPRRLTGQDTIQVRLVNAAASQNVDVVVWYRNEL |
Ga0180437_1001267718 | F067260 | GGA | MNHFEKIVDPDLKRCETPEQMLQVLMYHYELDCKLGTITSLAFRQGLKAAVNMINPKAKTSSSALSH |
Ga0180437_1001267721 | F035741 | N/A | MTAADVIGKYLIAEKDVPIVSFPGSAPIGVVQKGLVVGPVYSWIEKNGKLYWAFDYTIPGQAPGAYYAEHRPEFWKLSTTGAGGSTNVTITPGGLPSWAVPAGLAALALILLK |
Ga0180437_100126777 | F027829 | N/A | MAFTNRFEADISPKKTRIDAKAYQQYIDIPIGENPETGKVYTFRAYIAVSKMQKKLNYKPTILVTLTFFKYKLHLQTRDIDALNSAFRKLSSFIDLQEANLKDKLSQEISAYDKWEQEYIDRKKEGIISINR |
Ga0180437_100126778 | F041161 | N/A | MYTLQMMGKQVAESVQFADQFLPRATTPKEIWFILKDNLVYKNDPPGIELLQSFPSLMNDNYWGIPGAGDCDCFTIAALACAAARSIPARAVIVGNSSQAPTHVYCQYLVDGRWIDFDLVSSDYGITKPYKYKQTLKLH |
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