Scaffold Ga0180437_10012677

Overview

Basic Information

• Taxon OID: 3300017963
• Scaffold ID: Ga0180437_10012677
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9934
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (25.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F004838	Metagenome / Metatranscriptome	421	Y
F027829	Metagenome	193	N
F035741	Metagenome / Metatranscriptome	171	N
F041161	Metagenome / Metatranscriptome	160	N
F067260	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_1001267713	F004838	N/A	MALSAQDKILYVANKLGLSTLGQMQGSTGAVYDVDTDVSGQIFSSASRHQNPGVTNITENQFEVNEALLIENISFYVKNAAGDTLNFQNVYGSNAVILYDLVIGNKRVMKDTPVFAAGSPYTFANTGNIQKVNIDESLNPAFNPRHQTFLEGAGILIPPQVQWYVDYRIFNVVTGATIAASDETAIGCYLFGTRVLLNFNTTI
Ga0180437_1001267714	F002287	N/A	MSQVGKLGFVDSKLGAPTSGQQTTRILFNTIEAPGTTSSLSFFKNFQGLTNGQTNLTQNKLDSMESMVIKTIWLTQFQSSGELEAIGGLVQQTLSVIVGNQTVVKNLPIQFNQGINGQAFDRLHENGGSSTNEVAFANPIIQTAMPCEIRLLTDIVIPPQVAFEVRIESNAGVYGSGAVVCALAGYGKIFSAGSSF
Ga0180437_1001267715	F000710	N/A	MATNMDISYRQGIRSKGFAITAATGITQQTLSLSGLAKSFEGFLLTSAFTATPQTVINPKQLRITLTINNDVVIDDDVAVHYSSPATGGFSGGFPFFIPIPRRLTGQDTIQVRLVNAAASQNVDVVVWYRNEL
Ga0180437_1001267718	F067260	GGA	MNHFEKIVDPDLKRCETPEQMLQVLMYHYELDCKLGTITSLAFRQGLKAAVNMINPKAKTSSSALSH
Ga0180437_1001267721	F035741	N/A	MTAADVIGKYLIAEKDVPIVSFPGSAPIGVVQKGLVVGPVYSWIEKNGKLYWAFDYTIPGQAPGAYYAEHRPEFWKLSTTGAGGSTNVTITPGGLPSWAVPAGLAALALILLK
Ga0180437_100126777	F027829	N/A	MAFTNRFEADISPKKTRIDAKAYQQYIDIPIGENPETGKVYTFRAYIAVSKMQKKLNYKPTILVTLTFFKYKLHLQTRDIDALNSAFRKLSSFIDLQEANLKDKLSQEISAYDKWEQEYIDRKKEGIISINR
Ga0180437_100126778	F041161	N/A	MYTLQMMGKQVAESVQFADQFLPRATTPKEIWFILKDNLVYKNDPPGIELLQSFPSLMNDNYWGIPGAGDCDCFTIAALACAAARSIPARAVIVGNSSQAPTHVYCQYLVDGRWIDFDLVSSDYGITKPYKYKQTLKLH