Scaffold Ga0180437_10002021

Overview

Basic Information

• Taxon OID: 3300017963
• Scaffold ID: Ga0180437_10002021
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33580
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (88.14%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000888	Metagenome / Metatranscriptome	847	Y
F029419	Metagenome / Metatranscriptome	188	Y
F035302	Metagenome	172	Y
F036680	Metagenome	169	Y
F039535	Metagenome / Metatranscriptome	163	Y
F049622	Metagenome	146	Y
F065780	Metagenome / Metatranscriptome	127	Y
F074589	Metagenome / Metatranscriptome	119	N
F081323	Metagenome / Metatranscriptome	114	Y
F082668	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_1000202114	F039535	GAG	MLRLRHTPTEANDERTRHDLSRTEKRKLETYNQVQKEDTVNGVNVKKIVVLFVTSCIGWIGVADAAEAPKKVDRLQMKQHPFDFVPETKRSVPVWAKCPELWGKLRDAGWLEKDVIKADEVVWRESRCISTAHNKNDPNIVQGVKGSLGLFQINLFWIQRTTYYPKGYLQTVLNRELIPADLFDVDITIASAQALIVYDRAKGRCGWSAWISC
Ga0180437_1000202115	F074589	AGGAGG	MTPAQIEGFIDRICGLYPATTIALKKVKDAWTADDFLLYQSVEDARKIVPQIMDHYEKFPTLKQVHYEFRLLRKPAVERTVVVCEICDGNGWDNGKRWNFNTKELICEGFTKTVMERTYTYVVPCKCREFASA
Ga0180437_1000202117	F029419	GAG	MTLMRIEERKGDCQGNQDKCKLPDCPKFGTLGRPSRDGSRRVKGCADPTARGKRSRTKGLNKQRVARKRLGVAPSHKFGDGNEERWQDVLFANEVKAGKQIGAAVTAWLRIEAQVRSNEADFGSRRKPTRAILMPDDWGSEGLVMVRLSTWEELVRPAMHEYYEGGQ
Ga0180437_1000202132	F082668	N/A	MSDAFATIVVALISTIGVIIVGLMQLFKKEAREAAIENRQDHAIVQQQLRMIFKTVNRVDDKLEKHLDQHAEGTTNGKTARRN
Ga0180437_1000202133	F035302	GAG	MKRPYTGNKDGLAAGERKGLRVFINQLCALYPALWNNGSYVNRPMRGKKDLSVHATGRAVDLSYRFMAKEKRGIPEGGRKQAMEAMNFLVKNADAFGLEAILDYFPMPHGRGWRCDRSSWTIYNKKTISGAPMGDWFHAEISPAMADNPDAMREAFAQAVKPVA
Ga0180437_1000202134	F049622	AGGA	MKKAQDIAQRLIALFMANALAIITGSAIVGGIPVWKAAALAGFTAVAQVAERLAKASVDGNLTAQEISDAFGGNGKKVVKKRAAK
Ga0180437_1000202135	F065780	AGGA	MKKIKDYFVDNTWTWVGTGLVLITLSGTTFRQALLLTGIGIVIHSVLTLGSKE
Ga0180437_1000202137	F000888	AGG	MSAQYFAQIDDNNVVIKVAVVQREFLEANPQRYTGRWVETFFDTEGKTYAGIGFTYDEVSEDFVAPVVEEPAES
Ga0180437_1000202148	F081323	AGGA	MANYKVMSENCTLGKQGATLSADDLQGFNIDALVDGGHLAEVNVKVPKQDTKESDK
Ga0180437_100020219	F036680	AGGAGG	MKITKHSLDHIELISSGDTALFEIRLVVAMQDWSDDEADAGFDETGALSWLMNLLSLAAAGEDIQTGAQEFLKSMMTLNEERVHLCKVEKINYNIDEIGEVK