Scaffold Ga0180437_10000798

Overview

Basic Information

• Taxon OID: 3300017963
• Scaffold ID: Ga0180437_10000798
• Source Dataset Name: Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57176
• Total Scaffold Genes: 112
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 73 (65.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.3
  • Long. (^o): -115.8
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008501	Metagenome	332	Y
F042291	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180437_1000079846	F042291	N/A	MIKMPIYQSFNSRIGAWVKYHFTSAGFEVLDVKQKNPTVPFKKTPIKGKRRR
Ga0180437_1000079849	F008501	GAG	MKLQKSAVDLTDLAIGVVILGIVVSIGATVLVNMRDTHLTGTVDCNAVNTSGCGTAYNIADDAATGLAEYGNWFNIIVIVGVAAVVLSLIFLAFGGRTGGASY
Ga0180437_1000079850	F008501	GGA	MKLQKSAVDLTDLAIGIVVLGIVVSVGATVLVNVRDTNTQGDIAYNLADDAATGLAEYGNWFNIIVIVGVAAVVLSLIFLAFGGRTGGMSY