Scaffold Ga0181581_10002701

Overview

Basic Information

• Taxon OID: 3300017962
• Scaffold ID: Ga0181581_10002701
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13920
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031778	Metagenome / Metatranscriptome	181	N
F045582	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181581_1000270116	F045582	GGA	MSEQPANPNKSNSLEVEFSPESWKTEFHDDITSVRLNGEKLAEIRDLMDEMKSIKEKNDRTIKGLSIVIISLTIIGLCFLGFGLNYLMRFKVDKLDEMISEGAERFDMTNKTFIHTDAIVQLSDTWHPLLWDRQLQGWFVRKPNGAKRNFYDNVILPKKAYLDLTQSSLTWKQSKWHAPKDFPIQQKEDN
Ga0181581_1000270118	F031778	AGGAG	MKDGEVIDEESEEEIEQGTPLPANLVEVETPSETWKTEFKNEISSLRINGEDVSKIHRAMEELRKMRDSSDRSLRRLIILITLLLCSGLGIGAYSLNYLLRFNADKIDEVIDLNLLAIEKSKKGMIKIPLVAISLLEKHPNQLRWDETRSTWTFLDTFSETRKGFSDDYMFYSPGVIENLKNDFGLYWNGDNWNWPKGFEPKNY