Scaffold Ga0187778_10018041

Overview

Basic Information

• Taxon OID: 3300017961
• Scaffold ID: Ga0187778_10018041
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4331
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 3.8381
  • Long. (^o): -73.3194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005077	Metagenome / Metatranscriptome	413	Y
F008059	Metagenome / Metatranscriptome	340	Y
F020501	Metagenome / Metatranscriptome	223	Y
F039836	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187778_100180414	F008059	N/A	MGDLINPAERLAREEHERSEKRRQDLAEQCSNLNSPEVRIRTWERVHQLRMPSDPAHPILDVIAVGTRLTLEEVREEQRARAAWGLKPAPMSRS
Ga0187778_100180415	F005077	GAG	MGPEASPHEPFMRFALSAPTRKEQMEQLRQDRALAPVLRTAFPTVQHLRIELRFQGSGPSVPTSQTHMLYPPARAFFEHLCPYADCDGQFDLEGAVRAALAHPTHRAEGVLECHGSRGQDPASRRACLLQLTYEVTATHQQPS
Ga0187778_100180416	F020501	N/A	MDLIEYFERQRKRCERELKYAEAAGFQLCEQTARGEQDITQEHIQQLREARDDYQRMIEYLKAQV
Ga0187778_100180418	F039836	GAGG	MQVAVGQQWGIFSRKAQRWEVPTVISVENGTVNLKHRDYPGFCHLAAIEMLRLNDDHQLLEPLEEITPHWRG