Scaffold Ga0187779

Basic Information
Taxon OID	3300017959 Open in IMG/M
Scaffold ID	Ga0187779_10000061 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017959 Open in IMG/M

Scaffold ID

Ga0187779_10000061 Open in IMG/M

Source Dataset Name

Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	79887
Total Scaffold Genes	70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	53 (75.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

79887

Total Scaffold Genes

70 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

53 (75.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	3.8381	Long. (^o)	-73.3194	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Colombia: Department of Meta

Coordinates

Lat. (^o)

3.8381

Long. (^o)

-73.3194

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000174	Metagenome / Metatranscriptome	1764	Y
F012384	Metagenome / Metatranscriptome	281	Y
F079059	Metagenome / Metatranscriptome	116	Y
F103611	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187779_1000006112	F000174	AGG	MKNVYEVLRQKELELARLEKEVEALRVVAPLLSSEEGMDEVPKPTLAAQTSQQPIRIPQTAVNANPQPARAAGWEDTAKRWP
Ga0187779_1000006114	F012384	GGAGG	MPDSNPSPQHRRWTVIASGLLLAAVALVVIYTTRAAFHSLAAVVVLAAIGLAAVLLQLRLRGSGLAVHSPTWLNVIGLLCAVAALFADRLRLNPTLAQVMALAAVGCFAISSFRVLDAIRKARL
Ga0187779_1000006135	F103611	GGA	MDWGVVLALQVLAGTLWYWVLVRPGWVRILAVAACAPVFVAVANWAYLSALPSRFLTERATTPDLGDWKTVCTVPDMEVAEVRSPPDTSLARAGQAWLRAKEQYVVLTMPSCHTRLIRKPDAATQVDLNFASPAGVYLMTNWDNKTRQTHWWVGNGSLRPLSLLSEGSIVLGMPVLSNDGHWVAWMELIPGTKRRRAVVQSLNDERAHSVDIPDLGQWALLAADMERKELTFYLYDYTTRRSSLTMLGLGSEQQGDAIVAQGVDAQFTTLLRVGSGWVAWDAAREPGERYRVAWSLANGRGAHEALKGRGITAVKVDPDGAYVAISETNAILDNNVQDAVYVLRASDGKEVWHRNLPRYARSSLAFLGEKLFAYTDSDGANSTVRVLQIPDE
Ga0187779_1000006157	F079059	GGA	MSVANEILSVAVFVPLPGQEGTALATVRELSRTLTRSGYSRDTLYRGPEGEYVLVRYWKSDDARRAALDDAEAQRCWAKVAHEIRILKVYESLDKVPL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187779_10000061

Overview

Ecosystem & Geography

Associated Families

Sequences