Scaffold Ga0181583_10427749

Overview

Basic Information

• Taxon OID: 3300017952
• Scaffold ID: Ga0181583_10427749
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 820
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040577	Metagenome / Metatranscriptome	161	Y
F048887	Metagenome	147	Y
F068602	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181583_104277491	F048887	N/A	MHIRREIDNLLDKMNQIIANKKDANKDCPELNKIFDEIRRKTDNGKRAKGMWTNSPEFMSIK
Ga0181583_104277492	F068602	GAG	MDDNDPHADEMLEKSAFIVEALENNIHHYSDEQVAQLLLMQQSMEFYLKEDDTNKAIIECRNLYNYISEITQ
Ga0181583_104277493	F040577	N/A	MTELQKISSEIVEIFQNKINKLTKQQAENLNMHNNSMNFYMQLGEEEKALWEARKTLQYLEQITK