Scaffold Ga0181583_10090838

Overview

Basic Information

• Taxon OID: 3300017952
• Scaffold ID: Ga0181583_10090838
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2101
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008548	Metagenome / Metatranscriptome	331	N
F015588	Metagenome / Metatranscriptome	253	N
F027780	Metagenome / Metatranscriptome	193	N
F041165	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181583_100908381	F041165	N/A	PVDFVRVFKLNRAPVDEWIRRRAYPSLERFLDFHPDIEMLSPDWFTFMINATWIMTSLNWIESDEDGASLKLHHEL
Ga0181583_100908384	F027780	AGTAG	MLSLWAVPIGARTFQKKYNAKQIPHVTLLENLKPEKKAHEFFPTTMNLKAQSTEMVVRKMKDKYEYGWVFEYEGGDLFMTCHEVDKGEMPAMDIRKLDEKVLNTVVTYSIDGILVDPSDLDTVWAYDSDEVWF
Ga0181583_100908385	F008548	GAG	MDILPLDLQCDILKRATLLDLKENPFKPKYKVGFTFGINAVITLEWDNDLVEDDPWGFLDMIRHYYDKSIEDYEDHIFKMVEEEKKNYEYHVGLDGELFSRLYQENEHMLTFKFFIRSGDTMLDQRDLEFFKSMEPHMDKGYMMYQLVMLTQFLRDTYSIEFLEKYNEYVLREEGFDETE
Ga0181583_100908386	F015588	GAG	MDTLPSELVHNIFTRACIMEMEEKFPMNYRFYTDHGEIEFSSNDLVVRKDRVVADLSNFVYNHIFTSMRLPILHFEKRIGNKVVYSQHVHLWNDEIIQ