Scaffold Ga0181577_10063251

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10063251
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2610
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002942	Metagenome	518	Y
F038218	Metagenome	166	N
F052568	Metagenome	142	N
F091788	Metagenome	107	N
F093801	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_100632511	F091788	AGG	MKISKTTINMAARRGIAMTVTPEDELSNGQTSVEFARFEDGEPIDEHTARYTLTANGLFFAGGCGDTEEWPHWIQDETHLRALLPAIAAAI
Ga0181577_100632513	F093801	AGGGGG	MFRYPTQNTTAPVCPYCQASHPEPEDLDESAWQCVECDDCGKLYGAYRDYQGWTTRCGGNHKWHALNGVRVCSRCGADG
Ga0181577_100632514	F038218	AGG	MNTELLNAIQNMLINFANENAISLADEFGTREKFSQFVFSFTIKSLVDICGLDTKTAYDFVMGDGAFAKLADDCWQQLNAVAA
Ga0181577_100632515	F052568	N/A	MRRQLITPLMREAAELLWPAERRRVTVLLRAPEYWDECENADLEASEELADICFDLWVGAMT
Ga0181577_100632516	F002942	GGTGG	MSEEHWTAFVVLLAAVSLPSVSLLFAGAWELWGYSTKVKRSKINE