Scaffold Ga0181577_10055438

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10055438
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2814
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033013	Metagenome / Metatranscriptome	178	Y
F038240	Metagenome / Metatranscriptome	166	Y
F059943	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_100554382	F059943	AGG	MSKANFPELVPEWNEPNRGPGISYCVAKNARMFDYELLLAGERSLRGCIRAIDKKDAIRILKNRHPECAIVEVGKGRKIVPPSKKA
Ga0181577_100554385	F038240	N/A	MAIPAGNKYKVQVLLDPRAYEAMQREIIQRYDTEHRVTESSLANEIIKSHYAILESQHE
Ga0181577_100554387	F033013	N/A	MAISLTSKATTTKTVMLQIDPDLYARIKAAAKQHNLPASAAMRQILEQGIQEIEASVA