Scaffold Ga0181577_10026736

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10026736
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4196
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032672	Metagenome / Metatranscriptome	179	N
F040111	Metagenome / Metatranscriptome	162	N
F054055	Metagenome / Metatranscriptome	140	N
F065805	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_100267362	F065805	GAGG	MTDKEQIQHLIDKNNKLEAELITFKTKANDWLVDLKKAKADLIERNTELSRYKNTHVNWELKKKIILFLQNTQSLEAYDALTPNQIAMKAATFIEKILGSKHPPLLAITNELQMTTREPD
Ga0181577_100267365	F032672	N/A	MPNVVISNFINDKWVDRIYMAFNKTPYLLKPDGTIENCKIKKVKSKYYLTSTGKWFNNSGLRIDEPAGLDIKAERSKFDSEIKQADLDAKFNKLKQTIRGN
Ga0181577_100267367	F040111	AGGA	MSLQKHYLRSTKNLYNCVSNGVTVYYSYVTPVAIRDPFNVLHVCENVWSVTTGRHLTWIDGGTPEAKKKRLSYGDFQKLKDIYGVEREYWLNSSYIRPKTDTVPDIIKFDEMLPDSLQLLKI
Ga0181577_100267369	F054055	GAGG	MSKPIRTIQRILAQHQKDQNRDKTNKETFFSNYAKQTDKNKKIEMLREAAQEGWI