Scaffold Ga0181577_10006714

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10006714
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8738
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (29.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009442	Metagenome	318	Y
F016521	Metagenome	246	Y
F074811	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_1000671415	F074811	GGA	MPAKTKLKTASCPLGKWEATVTSDDVAQIKEFLERDNRYRTTGELTELATKYLGAGKKASSCSSCNRKLLNELQTLVKNADT
Ga0181577_1000671418	F009442	N/A	MTLRKVKRLLNESDDFLVFTMKKGSDDMASFGVYYQSLESWEILLNLAVSDYHIRETLRNVLNTADAYRDQQTEDESE
Ga0181577_100067144	F016521	N/A	MQKTSTKGKDLAWDICTRLRANEFKDLTLREIDDFRAEIAKFLDLKKEW