Scaffold Ga0181577_10001290

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10001290
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20284
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (62.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004106	Metagenome	453	Y
F006983	Metagenome	360	Y
F010026	Metagenome / Metatranscriptome	309	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_1000129010	F004106	AGG	MADNRVSIDPAYSIGADFVNNTTARNGRWNRITILKNNTSFSALTAQNWTGNSLVGESLPAGFEIQGVFTAFTLNSSGAVVAYKI
Ga0181577_1000129011	F006983	N/A	MAKARGGASAIDYAVGAEVINDTEVHTGKFLHIDFYESSTIDEIVSTNVIDNSFAGASIDSGAHLTGYFTSIQLQNGACIAYRI
Ga0181577_1000129027	F010026	AGCAGG	MAVKSKTALGRIEHRPGKPKKTRQGAGQHTKTVKHGRKKYRGQGR