Scaffold Ga0181577_10000398

Overview

Basic Information

• Taxon OID: 3300017951
• Scaffold ID: Ga0181577_10000398
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35143
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (87.93%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020172	Metagenome / Metatranscriptome	225	N
F066736	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_1000039818	F020172	GGAGG	MCTTVKRAMFCTRNGYKHIENLERVCVLVGRLKGLTESEYLDLCAVNKLENQRALELAKHFPAR
Ga0181577_1000039839	F066736	AGAAGG	VKIKEKFHDNHDGTFTVEKQFDNDVYLNRTAMLRSMGAGKLPDSWCVGSIPMHLLAQWMKEENVSWQDTEGRKKLIMRKLNDPDFKKLRIVEGRV