Scaffold Ga0181607_10084069

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10084069
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2047
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008190	Metagenome / Metatranscriptome	337	Y
F046982	Metagenome / Metatranscriptome	150	N
F056630	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100840691	F056630	N/A	MQKDKTEKVQEKVYYQWIKGDNSGNVVTIKDTDDKWINFNEGGRLAKDLQDEFIQLLDEDIAGEFIKPPVSNDPLNVSAKEKTTLVETALSTTPNPIRVLFNKQKKNNKVKLLLEFPVNIPQKAVYELMSTSFDKGEVNDVLQSFILDQLSEDEILDCLHNSVQSLIESKYKGE
Ga0181607_100840694	F008190	AGGA	MEEEHIEFNFIYSNDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMRQLQNAINRNISTTIFYVLGNLNKETVGGIQEYVESLSSKPITYKIYHSPDIMVNGTAEL
Ga0181607_100840695	F046982	N/A	MKTHRIFNKGQNVYCLLASHTNPNILLPVKGKIIDSKWDPVNPLYQIRIIKFYDSMKFLKKHFFDMNFRHVFENRARKMILKAEDYKTAKVLEERLNEKDRERFYVIVESVMCKKTK