Scaffold Ga0181607_10004628

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10004628
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11760
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049596	Metagenome / Metatranscriptome	146	Y
F073496	Metagenome	120	N
F074890	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1000462810	F049596	AGGAG	MAALDFGMALSRGMLPKSEKAQKDLINLAGGRNIFKSEDWWNKQVDKQIDTGYRTVERQDKEFLMPSGEYQPGKRQVSTTYGRTIMGQFSPMTGSFGMPYQPSYHPVFGYGGGVVARTSVSYKAPEGAVFTVDPRTREKQYTSRDFDVFGKREDYTAGELSDIENMAKAAAKKLKSETESKKASSKKLRRGTGGLLAKAVIGEGIATGLPKLGEGGLGLTGTMLGQESKL
Ga0181607_1000462822	F073496	N/A	MYEYILVVYMQMDNPQYVGSFTSCAAANDHVKEHYADAEYTTCLHEDYMFLPKDFLKKEI
Ga0181607_100046288	F074890	N/A	MWSFHLYWGFNIGFEFYEGEIDEFPVEYFLINLGPLRIQKAEWQ