Scaffold Ga0181607_10000926

Overview

Basic Information

• Taxon OID: 3300017950
• Scaffold ID: Ga0181607_10000926
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25945
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005337	Metagenome / Metatranscriptome	404	Y
F041622	Metagenome / Metatranscriptome	159	Y
F091417	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1000092631	F091417	N/A	MDDLTTLTFYRLCWSYDIDGLMNTFGDVFDSSSIDMDYAYFMVYTRKYRVKKPDNCEPILTWLLNIEPDINVGRIENDYTADEHIPNTALLLACNNGHIEVMKWLFTEEPYLASFKNRCYICDIFEISCCNSNLDITKIIFEKLADYISVRILILNKAYRNAIHHQNAQTAEWLLQINPTINIEVDDQSFSI
Ga0181607_1000092632	F005337	N/A	MNSISPYDLETGHTYYIESYNQGVRTNKYRGVINNLNACTWYEHNVLEIGNMIEYVNGQETTSSERDSPTFPGNIFYVHVGTNATEPQYWLFYKPVADYLMTTQVLRQRTRLDKVSIWGLYKQHLGKVQVGDATSGGTPPLRRTMRFVPNKKGVMQLKHVY
Ga0181607_1000092635	F041622	N/A	MMDIELHYVSNITLDNGVKTNIINPHILHAYEVIKKRNNYWGIFLRDKDEIIGNTMVTYEKEDNIDYLLLVAVYINDKYRGRKLGKALIEQTILKNEMQNKTNLVKVVIAGGMPMLKCLLSVFKELNYTIKKYNTTNENIQMLQNILPETAIKIEQSNYESDIWQTLFFDNND