Scaffold Ga0181607

Basic Information
Taxon OID	3300017950 Open in IMG/M
Scaffold ID	Ga0181607_10000878 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26555
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (25.00%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (40.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

26555

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (25.00%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F029447	Metagenome / Metatranscriptome	188	Y
F029448	Metagenome / Metatranscriptome	188	Y
F041804	Metagenome / Metatranscriptome	159	Y
F042621	Metagenome / Metatranscriptome	158	Y
F059985	Metagenome / Metatranscriptome	133	N
F059988	Metagenome / Metatranscriptome	133	Y
F067802	Metagenome / Metatranscriptome	125	N
F080618	Metagenome / Metatranscriptome	115	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_1000087810	F029447	N/A	MNIKSLALKNKLTEERTGEFYYDLTAPSFTYNADLGVKALHYVQIDQVGRIDKISELYFGSGEFIDAICVVNNIFNPFTIAEGDILVIPNLSRQDLVYSRPNPASRPNSTQEAYIDTGRQSEKDQGRMQRLIEKAKTSKAGVKQPMPPNMLQPGQETKQYEGGKIKLGTNLNSRNTKAN
Ga0181607_1000087818	F067802	N/A	MIKEIYSRDIDAPKYNDDIIEVTDKLQQLILKIENVLFTRRGDVLGAPNVGCNLDDLIFSLVLNESVIAQRINTQIQTYCLNSSDGSFGVDTRVQFYSTVERNGALVDIYINEQRVIGAL
Ga0181607_100008782	F041804	AGGA	MSKTRLGFYDEASQKTEFTDFNSVEELNAFYQEHYIPFDNCFVGDIVSIELFLAASDLYDFITEYRASDLTGDFRLTTGSDFDLQRNTQRAVLTKRQKAFIDKAVQDYRKYYNEIYRIYKTGIYSPCYAEPGWSEGTWYLNQLRLALTSNNNVAEFPYDDANIINEPPE
Ga0181607_1000087820	F059988	GAGG	MNTFTERRKGMPSVYKATYEEGWDLKNLGNDYNENLMKNSFSNYMFRNHRLADFLNDYLGPIMLFWINKVKYLRIYYNFGVPKDYQKIN
Ga0181607_1000087821	F080618	N/A	MANNWQYLNFFDKNGKYYNFDYDASSDKWTGTVYLPEVSIGLFEVGQLFILEEFIDSNTSTKKFGFPHGIEVPSGTTGATNGVCEWVAEWQTSDPTEIFLFQFDMDFDTGTQTSLEMEQDGPPLEIISALDIPLDYDPTETVDPSGLTITDKITSEALQINFAIRSETENTFKRTLLIKDKCTDAVIAEILVWGETVGEDERLKVMTQNMGYNILESDSSVFRDTNIKELLPDYMEVNLKRKEIMLEGSNVYPFIGSYKGLVNAIKFFGYDTLQVKEFWKNVDANSPQFGKYVQGNNISVFDPTVNYNDKSITLPNKRFRKTSLFSLVYRINNIVPDKYDIEDLPITEENFDFTIEEILIKLFGLKKKLEKEFLPLNAHIKDITGEADFFGLLEVVNTISRNDKREIVAGIDANFKLSTDDCIYIEDLRSFSSFCLGSEAIVDEAIVNFCNAYVAPFTTGVGRNIIAGPVNTGTIYPPPPIGPDFNDPMGAPFDGANVTVQALADAFVGYFTRYAPKLNKIGAWPDGESSWYLPDKPGIPVGALTTLENTSFNTLTWNNIDLTWNQLNDANKFFSFDIDPQGIAAGDIFTINDPDTNTGATYTAVGGDTDTDVVNNLYSQLIALKTSFVDPWVFWDISKENTVTGDVVRVFGQNVDRLKVTCQSVVGSQLLFKQLPGETLFTWDAIERGNFDEIEWTIFKDETDISPAYFEVIRGPIADYSKLPVILPYVGTYTVEMKLYDLYNNISSKVKTDFICVESREVEYSGWYQSRKENYTWSSEGKFKWNDYGSYWNLPIEPAITWEEETPSLYESLDRVNAILNNFGLGSSPDFQLLNYQDDGKASFSGPYFWDNLDIGGWNDTYHLWWDMTSTTGDTPAFFQFSEVIPDTYLKITDTKGNTAEHYFDLSTTTLAQAASSLNVSKDPIINKYVYNVVYDASNNQKFIQAVCRYFGVHGDWTYIDIVYADGSRVCPSTGNTGSTGSTGSTGCPSLIYRKGLHKASNPTWNTAKFINNGKTLPKMTWLMFVYDKCKIPGKANPRWIIKNTTNSRVADIYFESKYLTYLFKHPGKYEITLELTDTNGNKYKKGRNILVIK
Ga0181607_1000087822	F029448	N/A	MAISVTEILGTDSLSGSRLVLNDNFNILTSEINAMEVYFNPTAGTITNLNDLKTESLRVGLSTIYLDINASTFDVLTNVNMTGNLNLNGGGLVRNDVDPQTLNDTFAGGSPINVGTSTAVPPYTIERVGNSTGTAITVLLNDGVIGQEIFFVYSEAQTGAVDIKGAVNPLILPGAGGTPTLTLDAQGQSVHLVCVDDGTGNGDWYLVGGVGYTIS
Ga0181607_100008784	F042621	AGGA	MDNLEKEQLQWIKGDKIGTVEVISGNDGEWTTFESGSRIATSLISEFLMPIDGEPLDFNPPNPALTKAAETYKEKVTTQPKVTSPIRTLFDKQKKNDGVKLNLTFPIDVPKKAIYEIISTSFDLDEVNEELESYIKDQISEDLVKDSLFESIKQLIKSRYQAD
Ga0181607_100008786	F059985	AGGAGG	MVKIVLEPARNGVIKRVIDDNHGGGKEQWTSTDVYEESDSDSNRYEYIMKFFFELCEDLGLECGNKFDKNVLQFDTVWGTHYEPNKKEVESKIRELQAEIDLLKEWKQG
Ga0181607_100008787	F008190	N/A	METRIEFNFIYSKDAVRIKSFLGKVPRNIECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMKQLQTILERTTTTSVFYVLGNLNERTVVGVKNYVETLTDRDIEYNIYHSPDINVNGAAKLFENVVEFE
Ga0181607_100008788	F004606	N/A	MKAHRIFTKGQTVYCLLSSHSRPNILLPIKGLIVDTSWDPVNPLYKIRIIKMYDNMKYLKRYFFDMNFKYEFDNRARKMPLKKEDFTNTRSLEERFDEKDRERFYVIVESVMCKKTKNDLKDLFEKVQFYIISKNLKEIRETSARPFFKGSLSTDSTQEFDVRFKKGWTDKFQKGDIDIDKYLNSLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181607_10000878

Overview

Ecosystem & Geography

Associated Families

Sequences