Scaffold Ga0181584_10091898

Overview

Basic Information

• Taxon OID: 3300017949
• Scaffold ID: Ga0181584_10091898
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2084
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031778	Metagenome / Metatranscriptome	181	N
F045582	Metagenome / Metatranscriptome	152	N
F060659	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181584_100918982	F045582	N/A	MNDESKDSSISANSLEVELPQESWKTEFHDEIKTVRLNGEKIAEIRDLMDEMKSIKEKNDRTIKGLSIAIISLIIMGLCFLGFGLNYLMKFKVDKLDQMISEGVERFDMTNKTFIHTDAMVQLSDTWHPLLWDRKLQGWFIRKPNGARRNFYDNVILPKKAYTDLTQSSLTWKQSKWFAPEGFPIQQIGEN
Ga0181584_100918983	F060659	AGGAG	MAEGKDIYVAINGRVTKSVYQRMQYLANVLDVSMSTLIANSVAEYIHQVTDEKDGKPSVDMEIARFAYSKKKPQEGNQ
Ga0181584_100918984	F031778	AGGAGG	VKEDELIDEEPEEELDQGTPVPSNLVEIETPSETWKTEFKNEISSLRINGEDVSKIHRAMEELREMRNSSDRNLRRLIILITLLLCSGLGIGVYSLNYLLRFNADKIDEVIDLNLIAIEKTKQGMIKIPLIALSLLEKHRNQLRWDANRSTWTFLDTFTASRMDFSSDFMFYNPQS