Scaffold Ga0181584_10029622

Overview

Basic Information

• Taxon OID: 3300017949
• Scaffold ID: Ga0181584_10029622
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3951
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009668	Metagenome / Metatranscriptome	314	Y
F021057	Metagenome / Metatranscriptome	220	Y
F047991	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181584_100296221	F047991	GGGGG	MQTHNLVATNKSFSAVHTQNTLQQFKKRHKFAKQQTLSKHVTCTSIYTDDADVCFVFNVVHNNKTYTVDVYANYNNNYVSGNVYNCSFVKLATEILQQHFNLKVFFTERYICTS
Ga0181584_100296222	F021057	N/A	MQQLKTITKTKTKTVESVHADTVYAVIQNAYNNLQLIEADCTSASYFINSANIYAQLITLYAMFADTTDYVALDKVMQCFTNNITYYDESSLYENCVANTAMQNVKLLDYTSLSN
Ga0181584_100296226	F009668	GAGG	MQKVLEEAVRVTWVEEDAEWRAEFEQYGYDTDMFAYYGDGDCWRSNVQVVDVLEDEEFGYMCGNETDRRCYSFPITVYKAEEADGNYSFWISAEDEERIG