Scaffold Ga0187847_10003679

Overview

Basic Information

• Taxon OID: 3300017948
• Scaffold ID: Ga0187847_10003679
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11579
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004586	Metagenome / Metatranscriptome	432	Y
F025930	Metagenome / Metatranscriptome	199	Y
F100522	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187847_1000367915	F100522	AGG	VSTKFERWKELAARCLDEQNPAKLTELASEMNLVLAEKTPRLNLPLHATAGSQGEVQRDVLNANAEGKVCFT
Ga0187847_100036793	F004586	AGGAG	MTTIEQNKCAHLPCRCVVQSGDKYCGLACKEAGSEEVEIACQCDHGTCPLTV
Ga0187847_100036799	F025930	AGGA	MDVQDMSKEQLIDLADESGRNLENGKSQITSLEADQRKLVSLLLRLTKITGSLRNRLFELSMDNKALTESLEKRAPDVHALFSDLRSNAKDCPSLTDFPSIRELEESVEAILGPMH