Scaffold Ga0187879_10116898

Overview

Basic Information

• Taxon OID: 3300017946
• Scaffold ID: Ga0187879_10116898
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1522
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187879_101168982	F016632	GGAGG	LTGILEVFAIAEIGSGIGFLASWRNKVLKAKVNFFRQPNSRPSPFDKILRGKVGRAFTRQDRLRLQLADGLVNLIRKLVQYEAFRQVVRGLALAHSPMRQALWKKGGRSW
Ga0187879_101168983	F027079	AGGAGG	VIKTFLNLCLLLFLDMLAYMVAIFAAAAVAWAAVCGARWIFAALRNSVMSLRGRLRKKEMCAHAAR
Ga0187879_101168984	F025427	AGGAG	MQPGEMEELLASLGTCPVHKKGLFRRLLKLYWKKLLFIALMLVLPGGLIVLFLCVTAWALNWEHEMTAYMDETYKKWKEEHDVHSE
Ga0187879_101168985	F002761	AGGAGG	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELASFVGFKRARPRESVLRWINSHKVIALTTTEVVNYSVHGISSPLGVTFALGGTIVNTLMVAFVVPIWCRLSRLESRL