Scaffold Ga0187879_10000997

Overview

Basic Information

• Taxon OID: 3300017946
• Scaffold ID: Ga0187879_10000997
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19160
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F000540	Metagenome / Metatranscriptome	1043	Y
F056782	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187879_1000099713	F000540	N/A	MNKVKKKTANLPPKLTEVEQDLLSHIQDGYQLETDSLGGNPVLRRLKNNEEIRPLSANRNTIKAMERRGLIGPGKGRDPLTIVWRLKKK
Ga0187879_1000099714	F000072	GAG	MDVERIIDDIEQLQEMFEAPDIRPLSVSDISAANRRHDEMLAHSPWFQLWQRYRVCCRTEPPVLRLGESDS
Ga0187879_1000099725	F056782	GAG	VGKLEFGMHFAHVIRSRKVRAWVVLITLAILVTLIAAIFLQSRRSPKPIEMDDLYGLLD