Scaffold Ga0187819_10160520

Overview

Basic Information

• Taxon OID: 3300017943
• Scaffold ID: Ga0187819_10160520
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1337
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F005112	Metagenome / Metatranscriptome	411	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187819_101605202	F005112	AGGAG	MSLAARYKLFWAACIAMLCGLAFWKNSKSYPRKSKLWRLGKSAIDTGLVLILVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFASILAVSHLAGIVFEAVAVLGVFAVDLLTGQVVARMNKRERNKLAKAA
Ga0187819_101605204	F039911	AGGAG	MKYTIAVVLTVVAAVAGYFGIRRLTRKDLGFTPVKRYASKLANTLIHTEATAAQEAGATPAA
Ga0187819_101605205	F002761	N/A	MVWAGLGKLNELARFIGFKRAKPRETALRWISSHKVIALTATEIVNYSVHGISSPLGVTFALGGTIVNVLMVAFVVPIWCRLSRLESRFS