Scaffold Ga0187819_10129800

Overview

Basic Information

• Taxon OID: 3300017943
• Scaffold ID: Ga0187819_10129800
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1503
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F025336	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187819_101298001	F014639	AGGAG	MSEINRLPNTSVSNETGFLNRQWKSSRFFLAKRAFESKLEGILRAAAGHEGNSLPAGDSEYELLSTEANKVVVEFANRWRLDVDLLKARIPGLAKLEGLAVPPPKRNWASLAGLVIVAIPLIFFLMGMIGGLMSFGFHLAGGK
Ga0187819_101298002	F025336	GGAGG	MALIALIAAAEAMLFSASRAKQGQARRQQVLMGNAVDSLRALPLVDDYLKRKTAGASRVQVFIAAKVAEVCRQAVHTRSFEYLLLHLIRTAIQKRRRKFSISHLGVTL
Ga0187819_101298003	F013913	GGGGG	MTLTPSTKGSFIAGVGLWCLIWAALFKADDIAQVGGFQRWVSSERCLRWIRNHKSTSLIGTELCNYAHTGLDPLGVTFALGGTLVNVLVICLLLPIWDTAKRGRTALNMQP