Scaffold Ga0187819_10006304

Overview

Basic Information

• Taxon OID: 3300017943
• Scaffold ID: Ga0187819_10006304
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6575
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000151	Metagenome / Metatranscriptome	1897	Y
F000174	Metagenome / Metatranscriptome	1764	Y
F004611	Metagenome / Metatranscriptome	431	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187819_100063041	F004611	N/A	RPDAPRRYLAVAFESVLKALYKCGEALLVPDSRLNSRRWTVIASALLCGGLGLVVIYTKRSAFFSPLAVVVVAAIGLAAVLLQLRYYNREHSNPVHAPVWLNVVGVLCALAALFSDFLGLSGQIAEVMALGAVGSFAISSAMILHAFRKQRATSK
Ga0187819_100063043	F000174	GAGG	MKNVYEVLRQKELELARLEKEVEALRVAAPLLSDDKESMAEVSSNKPTLATPTTTQQPIRIPQAAVNASPQPARAAGWEDTAKRWP
Ga0187819_100063044	F000151	GGAGG	MQYGANGSNGTGNGTLRLTGDPHVQEVVKTAHEELRQLMRQRAEIMKRIGTLKQTISGLANLFGDEILGEDLLELIDRKTGGRQPGFTKACRLVLMEAGRPLAVREVCEQIQRRLPAVLLRHKDPLASVTTVLNRLVQYGEALSVVRENGRRAWQWVSDPALVEQSNHAAQL