Scaffold Ga0187808_10156259

Overview

Basic Information

• Taxon OID: 3300017942
• Scaffold ID: Ga0187808_10156259
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1006
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F025427	Metagenome / Metatranscriptome	201	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187808_101562591	F039911	AGGAG	MKYTIAVLLTVTAAVAGYFGIRRLTRKDLGFTPVKRYASKLATTLVHTETTAAQEAGVAQPA
Ga0187808_101562592	F002761	AGGAG	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFVGFKRAKPRETALRWINSHKVIALTTTEVVNYSVHGVSSPLGVTFALGGTIVNVLMVAFVVPILCRLSRLESRLS
Ga0187808_101562593	F025427	AGGAG	MQPGEMEELLASLGTCPIQRKGLFWRLFKLYWKKLLFIALMLVLPGGLIVLFVCACFWALNWEQEMTAYFDATFRKWKKDNDVQCDFDGWLDENGEEKV