NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187850_10024201

Scaffold Ga0187850_10024201


Overview

Basic Information
Taxon OID3300017941 Open in IMG/M
Scaffold IDGa0187850_10024201 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3412
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065339Metagenome / Metatranscriptome127N
F074279Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0187850_100242011F065339GAGGMDPIRVWFSLISGEAATPVNLVVEEWPQSGPAFLHPDILAVAAPDFKETIDLAYRQTLFTLGWPDSATFRIGIESIDPLAFPLPYGFEGDSHFGAVAVGLAQAVARTYPDHFRAGAKHLLPVLQAVSLERVAVAAALDSKKGDFKPVGCIRTKLDSFCMLEVSRPAVCVISPTQNLTVDSGPLLDVPLQNDPDPYVSVNGHQALPLLRARDPIDVFVQLWKAEAGTFAGCL
Ga0187850_100242013F074279GGAGMKRIRCVSLLTTSEVQPSRIAEILLRRECTAALVALLRDGDEKAQERWSKQSVPKILNAADKILRDAIDRSLPVTGLRPVEIRESVAWTADSNALSGRVLEVVSRQCIERVYAEAVERIARRRTLPLAELSLALVPFTDSYTPEKLLARECWCGCWVEDGVSKCSFCGGPAPGGRPTRVWRRVAYGNVQLDVLNETRHNLEERMEKLREMGAQVPSGVDPEDYLRQLEWDAPEGEETHER
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.