Scaffold Ga0187853_10001561

Overview

Basic Information

• Taxon OID: 3300017940
• Scaffold ID: Ga0187853_10001561
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20806
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006132	Metagenome / Metatranscriptome	380	Y
F028688	Metagenome	190	Y
F029005	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187853_1000156119	F006132	GGAGG	MKKWLCSVAGLSLALAGSLAALAQTPAVPPPNILDIETINIKPDMDGPYDRIASEYPDLSEQLKDPMHFLGMEALTGSPRAIYLAGYDSFEAFEKSEEWLTGNAATDAKFDAMDAREAAYVSEEHHVLWHYRPDLSNNVAGADIPHSHYWEVIIFHMRSGHDEQFKELTELYRDAYLKSGQNIPWSSYEGMMGVTDAYLILVPMKSLKDEDAGLAHQKDFDAALGDEGKKRMSKLSEESVASVEDNLFMVNPDWSFVEKSWIAADPQYWGGEPATKPTHKPAAGAAPAPKVSPTH
Ga0187853_1000156121	F028688	GGAGG	MCIAMSNALALMHWHDFRFLHDFSGRDLAWLLIGASLALLVFWVISRRRRRWF
Ga0187853_1000156123	F029005	AGGAG	MTGNTDSHIADLHTKAAYAHAAAAHVHSTGDHASAQELARKALGYSVEAVKHTEEIAQSAPQSMQV