Scaffold Ga0187775_10021793

Overview

Basic Information

• Taxon OID: 3300017939
• Scaffold ID: Ga0187775_10021793
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1760
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.2396
  • Long. (^o): -73.2024
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006351	Metagenome / Metatranscriptome	375	Y
F048408	Metagenome	148	Y
F064758	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187775_100217931	F006351	N/A	VAKRPQKKREPPSASDSKILPMELRVGDRLADAVEEWEVIAPPYSTAGGRVVHARVQRITEPASWQIRSWDASKRIDVRRPSAEEGKR
Ga0187775_100217932	F048408	AGGAGG	MMRLRRASVTLALGLLASAMTACAHCAWVLWEISSPTAKHPDWAYTKVYAEATNEACQQHAEVAIQRRTLQARNYGWTVTRGDANRVSFTKVGDPDPFFVDFQCWPDTVDPRGPKGS
Ga0187775_100217933	F064758	GAG	VRALLAFLLLIVMLVIGARVRGVRQSFWKFLAFVVACVVVLALLLAILAK