Scaffold Ga0187775_10020193

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187775_10020193

Scaffold Ga0187775_10020193

Overview

Basic Information
Taxon OID	3300017939 Open in IMG/M
Scaffold ID	Ga0187775_10020193 Open in IMG/M
Source Dataset Name	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1815
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location Name	Colombia: Department of Meta
Coordinates	Lat. (^o)	4.2396	Long. (^o)	-73.2024	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013098	Metagenome / Metatranscriptome	274	Y
F016870	Metagenome / Metatranscriptome	244	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187775_100201932	F016870	GGAGG	MYDRTIDRMSDGANELFVQFYLNSPKLSVSILLAVWLILFFSALWYFILLPASANSLANGSFESRLAGWGTGWLEDFPAYRGAARLHQFLATRSSQTGQLAVADWRSDPAEHRSGGRFALLVEHRSDKQTEVYSTLSQRIRVRPHTGYNVRFWAKVEHMEHDGDLWLSPNGGSVAWDEPKIEVSGAGKGWQLYKLDFNSGDRVDLDVRFVAEGPLKAWIDDVVVSRVPASETWVEKAGSWLRSLWSILR
Ga0187775_100201933	F013098	N/A	MRCAWLAAVSAVTILVGGCSVAPFVGYRNGPVTLYIGDVQHVCAAGGSGNRGCTMRYPNGRVEVYCADGDYECLAHELRHVADPTWQHDQDHRSVSAR

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