Scaffold Ga0187775_10000059

Overview

Basic Information

• Taxon OID: 3300017939
• Scaffold ID: Ga0187775_10000059
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22622
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (79.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.2396
  • Long. (^o): -73.2024
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013828	Metagenome / Metatranscriptome	268	Y
F016741	Metagenome	245	Y
F045975	Metagenome	152	Y
F094719	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187775_1000005917	F016741	AGAAG	MSSFAGTFPELAFDLGAELRATGRADLAGELEACSVKTVTYDSEADAGWVALEAERQLNAVERNVIGQKLGQVIAFGGARYASLQLDNFGRVVAVELLAPPKELRWKLMRLTSGDRSRAP
Ga0187775_1000005936	F013828	AGG	VGKWRYTVALPFLISLSGCIEINTYVSPAASGTVIDATTKKPIQGATISVGDHPGLFAQTNSDGQFILVPTTRTTHIFWLAPYSSLPPGGTIVVFADGYASREIVVNGAEQLLVSLVRVR
Ga0187775_100000598	F094719	AGG	MLFAPKTPALRRWRLWFGALLVAEIGWFALMRPPFAGHFNSVLLLALIPVAVVGYVYLLAAVAAFLDSRDWDYQMRQVIVIMLGLSVGFFVSVLSSISAAQLEASAAECHQAECPPADEPDQ
Ga0187775_100000599	F045975	GAG	VPRYEVTVQGRGIALPIADSVAIGFLRLVQLRARHPVEAEERAVELVRSDWAASAHAGRNLGDAPRLTISRIGLLHWWHRLLGAPRGYIFFTEDGVQVPSSSP