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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017937 Open in IMG/M |
| Scaffold ID | Ga0187809_10008678 Open in IMG/M |
| Source Dataset Name | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3492 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 35.9061 | Long. (o) | -76.1569 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013663 | Metagenome / Metatranscriptome | 269 | Y |
| F014996 | Metagenome / Metatranscriptome | 258 | Y |
| F037832 | Metagenome / Metatranscriptome | 167 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187809_100086783 | F013663 | GAG | VPTRPDRDGDEQFRLLGAAWEEAARHWQDEVARQFEADHWMPLVQQSRGYLEALRSLLDMFEAAERETEF |
| Ga0187809_100086784 | F014996 | N/A | VTTVHADIDALKGLREALVRFRYAQREVAERGGDEIELTRASLAAKASHWQARLEQDRAELEACRASGGPKAAPDSSAYVRAVEQTGERLEHVRRWQQRVEVEADEFRGTAGVFGGLLDSGLPRAETQLLALITSLEAARRVQASGS |
| Ga0187809_100086786 | F037832 | GGA | MTPQERTVEPAMAPSPASSPYLSLRQAVRPAIFAHFLLAEDQERARQLAAECEDLLFLTRELLKAAGLADILGVGGADLGADPGSAPPEEEDGGDRQAQLLGAYAEAGMLWAKVVGSTMALAQALLGRGDRDGARRLAGFLADAGEDGPAAELNIQLGKAVWDSCRGPLQDISNTMPAAAIGTAIDALRVVLLEVPEDFPDRNREVNRFLPPLDASVLAIMREQEIDIPYSSRVEHIAAGGVARYPDIVKLSLDEIAAEFDGLCHRPGHQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |