Scaffold Ga0187848_10056985

Overview

Basic Information

• Taxon OID: 3300017935
• Scaffold ID: Ga0187848_10056985
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1862
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187848_100569851	F014639	AGGAG	MFEITQSSSTPASMEAGPLNSRWKRILFLVYYKRAFLSKLEGILNAAAGHESNSLPSGNYQYQVLSARAESLCTEFAERWGLDVDLLRARIPGLTKLAGLSIPPPMKNYVRLACFGMITIPLALFLLGIMAGLVSVGFHLVGGR
Ga0187848_100569853	F013913	AGGAGG	MNLTPSMKGSFIAGIGLWLLLWAVLFKADEIAELGGIKRWVNSERCFRWIREHKSTSLIGTEVCNYAHTGLDPLGVTFALGGTLTNFIVIYILLPMLNRARRGNKTIDLKF
Ga0187848_100569854	F020887	AGG	MRTRITLYGEIAGPIWMPAVECTKDFHLELVRIPRTSRIRTYPGIMPRTMEITRLRDALLHLTSDGDFRSCSINWARLEVSHTFGDESRGNRTVKARTRVWDLRGQGENADCFA