Scaffold Ga0187801_10093912

Overview

Basic Information

• Taxon OID: 3300017933
• Scaffold ID: Ga0187801_10093912
• Source Dataset Name: Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1133
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 35.9061
  • Long. (^o): -76.1569
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006278	Metagenome / Metatranscriptome	377	Y
F015384	Metagenome / Metatranscriptome	255	Y
F017965	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187801_100939121	F015384	AGGAG	MSGFHSITAAVDARNYASPAEIVACFQDQRNALGRLAFLITGDQATAEQALVQACEMTLQGNSPFRDWLFEWAKAATIASAISHRTEAIRICEAEYTDRGCSHVE
Ga0187801_100939122	F006278	GAGG	MFRAEIQWLVGGPTLKLEGKLVADWAEEARCLVTKDVLPKGLIVDLTEVIYIDSVGEELLKWLASVGALFVAGNVYAISVCDRLGLSPMQRISERRKRRHGNNEERSSIRHSHPVEAI
Ga0187801_100939123	F017965	N/A	SMPNSRIALADMPEKIGHRDSLYLFACHLEWHTRRNLAAYQELLAALDDHDADIRCVAEALLHRSSPRPERTAASIESW