Scaffold Ga0187877_1012066

Overview

Basic Information

• Taxon OID: 3300017931
• Scaffold ID: Ga0187877_1012066
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5227
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019267	Metagenome / Metatranscriptome	230	Y
F022798	Metagenome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187877_10120662	F019267	GGAGG	MAASGTSTTLYSFREERRRLYRRIRVDITGLQTGANTIAHGITKRESPAAGAVPIEERVLLTSNVAVHRTQPADATNLYYTVDSGSGTTISVFVTA
Ga0187877_10120663	F022798	GGAGG	MSYTTVNNVAAMFPTFTRNGPKGPSDALIQIFIDDVAAEIDAVLQRRFQEAYASLGFTAWQGSLGADQLNILEKINRYGACAQLAGVFETAGIAAAARAAKGFEDTFQEAYNKLNARDQDGKPFAQGGDYDYLFDPLAKVETPRPQLGGAAGGDQQPQSRAEEGSHVNFRKWDRRES