NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187849_1127505

Scaffold Ga0187849_1127505


Overview

Basic Information
Taxon OID3300017929 Open in IMG/M
Scaffold IDGa0187849_1127505 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1048
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F005112Metagenome / Metatranscriptome411Y
F007120Metagenome357Y

Sequences

Protein IDFamilyRBSSequence
Ga0187849_11275051F005112AGGAGMSLVTRYRLFWAALMAALLALAFWKNSRSYPRESRLWRLGKAAIDTGLVVLMVIYAPALLLMYVVIWLTSPFRNRIMQVTAAFASILAITHLAGVVFESVAVLGVFAVDLLTGEVVARMDKRERNKLAKAA
Ga0187849_11275052F007120AGGAGGMKTLIIVLSAACAVVAGYFGVRYFTHRDLDFTRARKYVRSLANNLLHTELTAAREAGTTPEATTEQAA
Ga0187849_11275053F002761N/AATSSFSAGAVFWGMVWATLGKLNELVHFLGFKKSHPREILLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNIFMITFIVPIWCRLSNLESR

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