Scaffold Ga0187849_1060213

Overview

Basic Information

• Taxon OID: 3300017929
• Scaffold ID: Ga0187849_1060213
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1729
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F007120	Metagenome	357	Y
F015428	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187849_10602131	F007120	AGGAGG	MKNLIIILSAACAVVAGYFGARYFTRRDLGFTSARKYVQSLAKNLLHTELTAAREAGATSATTTE
Ga0187849_10602132	F002761	AGGAGG	MTFTPSATSSFSAGAVFWGMVWATLGKLNELAHFVGFKKAHPRKAVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNLCMVTFIVPIWCRLSKLESH
Ga0187849_10602134	F015428	AGGAGG	LTGILELFALVEMGSGIGFLLRWRNRLLASKVNYFRPPHNRKSPFDKLVRAETGPVITRQDQLSVKLADGLTAIVRRLVMLDAFRQLMRALALPHSPLRRRLRGRRRLS
Ga0187849_10602135	F003859	AGGAG	MDEQNTPKGTSLDRTSTPGSSWPGANLYRSLKLGWQWRRLRWAVVAASEAAQGHEANGLPPGSKEFKTLFDEVVRKVQEYSTESGDPLDTLQARLPALCALERLAYPAPTVPRNKAGLTFGILSAAVLGPIGMGALIGLGAGMAHWIARLFG