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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017929 Open in IMG/M |
| Scaffold ID | Ga0187849_1044751 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2121 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium CG11_big_fil_rev_8_21_14_0_20_42_13 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022139 | Metagenome / Metatranscriptome | 215 | Y |
| F038963 | Metagenome | 164 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187849_10447511 | F022139 | N/A | REAINKIQSLHPKWRSHNIWERAKELGFDQRYVQKRPPWSAADDALLHDFAQEQSARMIARLLHRSERSVRWRFAILGESCKVQDNYSQEELARDLCVSPKTVRHWEESGFLERRDGRITHESLEEFCRKHASEINYAALDREMQRWLREDVGFVPAKAQPRNGKGILRHLQKVGVCAWCGRKTRGNAHGRHVEACARKNGSKGGLQASGDQTTVACLPAAPTTKLSAVLRHSSNEG |
| Ga0187849_10447512 | F038963 | AGG | MVDSPKRRTVRTSKAEACVSQTARREADRQARRIPWQRLLEARQQYVEWNAFSLWGRAVAEAEGQVPAWLAKLLDERCPGLLGSERTSEITHQDPLLYRRVLEWSETNVLVQANEEGWLRAVTFYAVRDPAFVRDCAYSQYCEVQWKRQRPSAYPAFEEWRRASERCADEVLDAFEMAEDKRQIVKISRLVGPERFAAAVAQYMEWEAFTYWLRSLLESDTKLPGAVVKELKRRCPGFLECDEVLRSTLSPEDYTRRWKALLEWGENRFFSKMEQEGWFHAVAYEARAHPRSVRTVDYWVFYWDEHWSSHPEGNYPSFDEWRSTADNFVVGAAGKQATVV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |