Scaffold Ga0187849_1003226

Overview

Basic Information

• Taxon OID: 3300017929
• Scaffold ID: Ga0187849_1003226
• Source Dataset Name: Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14641
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F004817	Metagenome	422	Y
F005112	Metagenome / Metatranscriptome	411	Y
F007120	Metagenome	357	Y
F008540	Metagenome	331	Y
F015428	Metagenome	254	Y
F020126	Metagenome	225	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187849_100322611	F002761	AGGAGG	MTFTPSATSSFSAGAIFWGMVWVTLGKVNELVHFIGFKKANPRQTVLRWINAHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNAFMVTFIVPIWCRLSKLESR
Ga0187849_100322612	F007120	AGGAGG	MKTLIITLSAACAVVAAYFGVRHLTHRDLGFTPARKYVRNLAENLLHTEVTAAQEAGTVPEATSEQPA
Ga0187849_100322613	F005112	AGGAG	MSLITRYRLFWAALMAALLGLAFWKNSQSYPHKSRLWRLGKAAIDTGTVMLMVVYAPALLLMYVVVWLTSPFRNKIIQVSAAFASILAITHLAGVVFEAVAVLGVFAVDLLTGQVVARMDRRERNKLAKAA
Ga0187849_100322615	F020126	GAGG	MNRLANLALSVGETLVHEAARLLFGIALGWANELLGTPQPLGTRQLALNRALQKKSVDGALLEGSRTGKEYAKFALKKGLPTDQRPST
Ga0187849_10032264	F008540	GGAGG	LRTYQPEYALIARETREENRKQLADMLSQIATERAARLPPPPRSPVSLETQFQETIRKTREDIQRAKDVQAAHILRWLRS
Ga0187849_10032265	F057060	GGAGG	VNYQHLHFQFPAEPFQRCHVIEDRSAPRGMRFRHPRQPGEESDPKVNFGVYELSARLEHAGVEYLRIALGKDAHSFELASAVLTLGAIEGEGPSEGIWHPAIHWVRDDGFYAVCLRERMPYRDACHLFGFDIPAGKPSVPKRIKRDVARGKTSLFGELLDTRQLNEWDLLHTVILADGETTFEVATYNPGNRWPEAWTSGAALASPRGGAILTGHQVQIGDMIQITGAMPNGQIKGNCLIWDIEPDLVVWDVKPELRAWEGQIYLSVLNELHGGLANLDVQTASNLDLAKVRDHKLIQYLCQQFACDVFDVMRDDDRVKEEIGFYNPASWVDEDGNSVMNENRWKLWRMYSAGLPAMQFRTCRDAFYRTQMESPENNNPDRFRMRFREPGDLMKVQSNDLAGAAVRRYIFPEPFVFDEKGYPHWERSTLPDVNSVYLGGFDGEFISLRNPNASHKESGKLRGRKLQRFAGIDRGAAMFVHLGFAASPDGTPGMAKSFNGADFDDSVLALLDPEIVRHWKTLPAYPWSVAKPAGVKVIDDGDALFDRNPRIPVYDQRYVLCMLYDAKRGQTGIGYVVNAITWFNLLWLNRESIVSELRAMPPSPQVAEAIRWMEQELPKSQMPMVASRLEEIIDSIKMNGKSVDWANGLITEFRDTCPVAPKFWWKGGYLGQGRIPRDRIENGNEPIPVTTSMDVAHAQWIELFQKARMFADKESWRHCWQVPPEIRRFPTRPEAKAAARDFWLFYNQTREAKKLEFLRTGEDHRGKKIMSEQDAGIAAYLYAEEEVHNRIKASGMYLDIYAELVKLIFDRALTLEPPHNPDGTLKPIADGILGGPHTLDGLLDIARAAGVTRSHVPLTWESARVRADYGDLNLDIVVEDTLVRIAGTSAKSANWIGIVDLPDGQYRTEHGLVVTKDTIEAPPQEPAVALVAVNGFEQRLKDQSLQRADRKRIEAELKAFRAQVCNGVTIKPVTYHNPESQEDEPGAEVFLEGSSEPFGWIAQEHLPAVTRQLKGVLVSGGQYSLKVLCPLSEQALNC
Ga0187849_10032267	F004817	AGGA	MPNSAAVVQLPEILRNKSSHLVKLAGKVDSFSLLLRDTPEGELKRSIEEQFHAMVFATRKEIRRYCPRYRSLPREGILDFNTDCNSGQLDPGDLGKAPPPKRGSLCETCFFFVGIPEEQVSQMTVSPTSQDLVFAV
Ga0187849_10032268	F003859	AGGAG	MDELKAERSSTPAHSWPGASLYDSLKLAWHWRRLRWAVVAASEAAQGHEANGLPPGSKEFKTLFKEAACKVQEYSAESGEPLETLRARLPALCALERLANPTATMPRNKAGLTLGILTAAILGPTTIGALIGLGTGMAHWIAHLFA
Ga0187849_10032269	F015428	AGGAGG	MTGILEMFALVEMGSGIGFLVRWRGRLLASKVNYFRPQHNRKSLIDKLVRAQTGPVITRQDRLCLKLADGLTVLIRRLVILDAFRQLIRALALPNSPLRRKLRSKRMLT