Scaffold Ga0187849

Basic Information
Taxon OID	3300017929 Open in IMG/M
Scaffold ID	Ga0187849_1001337 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27128
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (90.62%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

27128

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (90.62%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F032938	Metagenome / Metatranscriptome	178	Y
F036810	Metagenome	169	Y
F041733	Metagenome / Metatranscriptome	159	Y
F045057	Metagenome	153	Y
F045709	Metagenome / Metatranscriptome	152	Y
F070426	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187849_100133710	F032938	AGGAG	MQKFLVVSYDDDQQQWFWDYVAAKRAEDAVAHVCERRPYVIAADAASLSQVQGIARDMKSRSIARIIHQFNSDTATAKE
Ga0187849_100133711	F014894	AGGAGG	MSLRKGSATMRMSIGVPGFSIYFEHHQVKPFIKDHSKKARDLFNELVVPAVLRGTCKALEVVANNTADAHDYLISKMKSKQSA
Ga0187849_100133712	F045709	GGAGG	VNLTPSQKGSFLAGVGLWVLIWASVWKADDIAEAMRIQRWFNATRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLFLPCLEKLLRQKGTASATLQ
Ga0187849_100133713	F070426	GGAGG	MILELIVAAEASALSASWIRRSRMRRQEILMSGSTSEINLPFLDQYLRQQTANPTKLQTFAAQKLAAVCRRAVHTGAFELLVLKLIQSASRRYRRESEISKVEVIL
Ga0187849_100133714	F036810	AGGAGG	MSFQSSQGTCVSTPAIWLARATAKCRAVQLSIERRSFERKLETIVRAANAHHSCGQSPGTAQFKLLRECADDLCSHFAQSWDISPELLEAQIPAITKLKSLADPPTKPEPLALVSLGVAGAVALFFLMGVLAGLASVGYHLIGGR
Ga0187849_10013374	F041733	AGGAGG	MFAIKPDGRKKITLTDLLICGVLGAAWLPLGIAAAAGIGGYMYLQSKTEEYRRNHPEEVKKLKA
Ga0187849_10013375	F045057	GGAGG	MQETWIRKSLTAKQWDRIFYGCPGAWAGNKPEPNQAGTIVIDGGNILAAVQYLNRQRVRVLYAKAPLPGIWCSDKGIILGIGLRR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187849_1001337

Overview

Ecosystem & Geography

Associated Families

Sequences