Scaffold Ga0187849

Basic Information
Taxon OID	3300017929 Open in IMG/M
Scaffold ID	Ga0187849_1000267 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	75600
Total Scaffold Genes	70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	58 (82.86%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

75600

Total Scaffold Genes

70 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

58 (82.86%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000109	Metagenome / Metatranscriptome	2202	Y
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F004301	Metagenome / Metatranscriptome	444	Y
F006579	Metagenome / Metatranscriptome	369	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187849_100026712	F006579	AGGAGG	MTPSDASSTIPGNPDCILGLMKLPAFQNLLAKVETNFYRNRPKEAAELELEGTIRFTLQERAAQAWEILAKARSTGLPMDQAQELISELVYPPLESDGN
Ga0187849_100026723	F003942	GGAG	MLGRRLNPTIHRYEDVELIEVHSEYLECRFLVAKDEWETGQPLLNLFSPLDGNVLGFPHYRLHRDNISAAGPKFPDGTTVQPGMAEAIEVQRQAGHALYADHLSAMLYGTGPNPARS
Ga0187849_100026725	F003764	GAG	MQIQDDSTYVLDENPAALLAGAEIEAAAICRCFKIVRFWSQSSALSRSRRDEMIEEEQRIANLYAAKLFEIGCAFGIETADELKVRIEAACILDPWECPPAEQGLLFPIPTDSATAASPATARK
Ga0187849_100026726	F004301	GGA	MAIAHKPAQLRDSMTAMQFSLFQAQPIAATVDTEPSINARNAKRQLDTLRSQLATAQADLEDVNYNLSIVTMHQQASGEGKIDANWWDAAMRFGMLDLDEEPAYRLGSYPVKVMRWIRHLIFTLHAERRDVQLAIAELEPKVAALSEIIGDAIK
Ga0187849_100026742	F000109	AGGAGG	MTQTKKARTRTKVRIVAPLEKRTQLRLTVDSRFTKTHFNQLFAVLGIRKKNALAEHIIMNFKAKVAQAQLVAFYNNQWLNIPFQNIDTAFVFPLTYEIADELERVGGEVLGGVNRSKTFRVMVAYFASIYKLKSQTQTVPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187849_1000267

Overview

Ecosystem & Geography

Associated Families

Sequences